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Entry details : U10236

[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
GENERAL INFORMATION
ID U10236; SV 1; linear; genomic RNA; STD; VRL; 573 BP.
Primary AC U10236
Creation Date 07-SEP-1994 (Rel. 40, Created)
Update Date 23-JAN-2011 (Rel. 122, Last updated , Version 0)
Description Hepatitis C virus partial genome, no 5'UTR, partial CDS (Contains: C), no 3'UTR.
Genotype
Deposited n.a.
Provisional n.a.
Confirmed n.a.
Isolate Z4
Keywords partial genome;  partial CDS;  C; 
Organism
OS Hepatitis C virus
OC Viruses;  ssRNA positive-strand viruses, no DNA stage;  Flaviviridae;  Hepacivirus; 
[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
REFERENCES
[1]
RA Bukh J.;  Purcell R.H.;  Miller R.H.; 
RT Sequence analysis of the core gene of 14 hepatitis C virus genotypes
RL Proc. Natl. Acad. Sci. U.S.A. 91(17):8239-8243(1994).
RX DOI: 10.1073/pnas.91.17.8239  
PUBMED: 8058787  
[2]
1 - 573
RA Bukh J.;  Purcell R.H.;  Miller R.H.; 
RT Sequence analysis of the 5' noncoding region of hepatitis C virus
RL Proc. Natl. Acad. Sci. U.S.A. 89(11):4942-4946(1992).
RX DOI: 10.1073/pnas.89.11.4942  
PUBMED: 1317578  
[3]
1 - 573
RA Bukh J.;  Purcell R.H.;  Miller R.H.; 
RT At least 12 genotypes of hepatitis C virus predicted by sequence analysis of the putative E1 gene of isolates collected worldwide
RL Proc. Natl. Acad. Sci. U.S.A. 90(17):8234-8238(1993).
RX DOI: 10.1073/pnas.90.17.8234  
PUBMED: 8396266  
[4]
1 - 573
RA Bukh J.; 
RL Submitted (31-MAY-1994) to the EMBL/GenBank/DDBJ databases. Bukh J., National Institutes of Health, Hepatitis Viruses Section, 9000 Rockville Pike, Bethesda, MD 20892, USA
[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
FEATURES
source
 1..573
(573)
db_xref taxon : 11103
db_xref EMBL : U10236
db_xref euHCVdb : FJ462439
host Homo sapiens
mol_type genomic RNA
organism Hepatitis C virus
RBS
 <1..13
(13)

IRES
function The internal ribosome entry site (IRES) is made up by domains II to IV of the 5'UTR
standard_name IRES
stem_loop
 <1..13
(13)

5UTR-dIV
function 5'UTR domain IV is a component of the IRES
standard_name 5UTR-dIV
misc_feature
 528..>573
(46)

5UTR-dIV
note C/E1 genotyping region
gene
 1..>573
(573)

5UTR-dIV
locus_tag HCVORF1
CDS
 1..>573
(573)

5UTR-dIV
codon_start offset : 1
db_xref UniProtKB/TrEMBL : Q68153
locus_tag HCVORF1
product Partial HCV polyprotein (contains C).
translation VIEW
mat_peptide
 1..573
(573)

C
function C protein coding sequence (c sequence)
locus_tag HCVORF1
product RNA binding nucleocapsid protein (p21) (capsid) (core protein) (nucleocapsid) (C protein). Produced by proteolytic processing by the host signal peptidases
prod_ft
chain 1..191  (191) C protein
prod_ft
init_met 1..1  (1) Removed from C protein by the cellular aminopeptidase
standard_name C
[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
SEQUENCES
Sequence VIEW
Translation(s)
locus_tag HCVORF1 VIEW
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