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Entry details : L39309

[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
GENERAL INFORMATION
ID L39309; SV 1; linear; genomic RNA; STD; VRL; 447 BP.
Primary AC L39309
Creation Date 21-NOV-1995 (Rel. 45, Created)
Update Date 23-JAN-2011 (Rel. 122, Last updated , Version 0)
Description Hepatitis C virus partial genome, no 5'UTR, partial CDS (Contains: C, E1), no 3'UTR.
Genotype
Deposited 2
Provisional 2n
Confirmed n.a.
Isolate n.a.
Keywords partial genome;  partial CDS;  C;  E1; 
Organism
OS Hepatitis C virus genotype 2
OC Viruses;  ssRNA positive-strand viruses, no DNA stage;  Flaviviridae;  Hepacivirus; 
[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
REFERENCES
[1]
1 - 447
RA van Doorn L.J.;  Kleter B.;  Stuyver L.;  Maertens G.;  Brouwer H.;  Schalm S.;  Heijtink R.;  Quint W.; 
RT Analysis of hepatitis C virus genotypes by a line probe assay and correlation with antibody profiles
RL J. Hepatol. 21(1):122-129(1994).
RX DOI: 10.1016/S0168-8278(94)80148-7  
PUBMED: 7525693  
[2]
1 - 447
RA van Doorn L.J.;  Kleter G.E.;  Stuyver L.;  Maertens G.;  Brouwer J.T.;  Schalm S.W.;  Heijtink R.A.;  Quint W.G.V.; 
RT Sequence analysis of hepatitis C virus genotypes 1 to 5 reveals multiple novel subtypes in the Benelux countries
RL J. Gen. Virol. 76(Pt 7):1871-1876(1995).
RX PUBMED: 9049395  
[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
FEATURES
source
 1..447
(447)
clone NL50
db_xref taxon : 40271
db_xref EMBL : L39309
db_xref euHCVdb : D50409
mol_type genomic RNA
note genotype: 2
organism Hepatitis C virus genotype 2
misc_feature
 51..>447
(397)
note C/E1 genotyping region
gene
 <1..>447
(447)
locus_tag HCVORF1
CDS
 <1..>447
(447)
codon_start offset : 1
db_xref UniProtKB/TrEMBL : Q81285
locus_tag HCVORF1
product Partial HCV polyprotein (contains C, E1).
translation VIEW
mat_peptide
 <1..96
(96)

C
function C protein coding sequence (c sequence)
locus_tag HCVORF1
product RNA binding nucleocapsid protein (p21) (capsid) (core protein) (nucleocapsid) (C protein). Produced by proteolytic processing by the host signal peptidases
prod_ft
chain 1..32  (32) C protein
standard_name C
mat_peptide
 97..>447
(351)

E1
function E1 protein coding sequence (e1 sequence)
locus_tag HCVORF1
product Envelope glycoprotein 1 (gp31) (E1 protein). Produced by proteolytic processing by the host signal peptidases. E1 forms heterodimers with the viral E2 envelope glycoprotein
prod_ft
chain 33..149  (117) E1 protein
standard_name E1
[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
SEQUENCES
Sequence VIEW
Translation(s)
locus_tag HCVORF1 VIEW
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