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Entry details : L38333


GENERAL INFORMATION
ID L38333; SV 1; linear; mRNA; STD; VRL; 1193 BP.
Primary AC L38333
Creation Date 24-NOV-1995 (Rel. 45, Created)
Update Date 23-JAN-2011 (Rel. 122, Last updated , Version 0)
Description Hepatitis C virus partial genome, partial 5'UTR, partial CDS (Contains: C, E1), no 3'UTR.
Genotype
Deposited 4f
Provisional 2o
Confirmed n.a.
Isolate n.a.
Keywords partial genome;  partial 5'UTR;  partial CDS;  C;  E1; 
Organism
OS Hepatitis C virus subtype 4f
OC Viruses;  ssRNA positive-strand viruses, no DNA stage;  Flaviviridae;  Hepacivirus; 
REFERENCES
[1]
1 - 1193
RA Stuyver L.;  Wyseur A.;  van Arnhem W.;  Lunel F.;  Laurent-Puig P.;  Pawlotsky J.-M.;  Kleter B.;  Bassit L.;  Nkengasong J.;  van Doorn L.-J.;  Maertens G.; 
RT Hepatitis C virus genotyping by means of 5'-UR/core line probe assays and molecular analysis of untypeable samples
RL Virus Res. 38(2-3):137-157(1995).
RX DOI: 10.1016/0168-1702(95)00052-R  
PUBMED: 8578855  
FEATURES
source
1..1193
(1193)
clone FR4
db_xref taxon : 44023
db_xref EMBL : L38333
db_xref euHCVdb : D50409
mol_type mRNA
organism Hepatitis C virus subtype 4f
5'UTR
<1..238
(238)

5UTR
function 5'UTR highly conserved genomic region (contains four structural domains (I to IV), domains II to IV make up the internal ribosome entry site (IRES))
standard_name 5UTR
RBS
<1..251
(251)

IRES
function The internal ribosome entry site (IRES) is made up by domains II to IV of the 5'UTR
standard_name IRES
stem_loop
<1..15
(15)

5UTR-dII
function 5'UTR domain II is a component of the IRES
standard_name 5UTR-dII
stem_loop
22..220
(199)

5UTR-dIII
function 5'UTR domain III is a component of the IRES
standard_name 5UTR-dIII
stem_loop
228..251
(24)

5UTR-dIV
function 5'UTR domain IV is a component of the IRES
standard_name 5UTR-dIV
misc_feature
766..1189
(424)

5UTR-dIV
note C/E1 genotyping region
gene
239..>1193
(955)

5UTR-dIV
locus_tag HCVORF1
CDS
239..>1193
(955)

5UTR-dIV
codon_start offset : 1
db_xref UniProtKB/TrEMBL : Q81262
locus_tag HCVORF1
product Partial HCV polyprotein (contains C, E1).
translation VIEW
mat_peptide
239..811
(573)

C
function C protein coding sequence (c sequence)
locus_tag HCVORF1
product RNA binding nucleocapsid protein (p21) (capsid) (core protein) (nucleocapsid) (C protein). Produced by proteolytic processing by the host signal peptidases
prod_ft
chain 1..191  (191) C protein
prod_ft
init_met 1..1  (1) Removed from C protein by the cellular aminopeptidase
standard_name C
mat_peptide
812..>1193
(382)

E1
function E1 protein coding sequence (e1 sequence)
locus_tag HCVORF1
product Envelope glycoprotein 1 (gp31) (E1 protein). Produced by proteolytic processing by the host signal peptidases. E1 forms heterodimers with the viral E2 envelope glycoprotein
prod_ft
chain 192..318  (127) E1 protein
standard_name E1
SEQUENCES
Sequence VIEW
Translation(s)
locus_tag HCVORF1 VIEW

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