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Entry details : L16652

[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
GENERAL INFORMATION
ID L16652; SV 1; linear; genomic RNA; STD; VRL; 576 BP.
Primary AC L16652
Creation Date 22-SEP-1993 (Rel. 37, Created)
Update Date 23-JAN-2011 (Rel. 122, Last updated , Version 0)
Description Hepatitis C virus partial genome, no 5'UTR, partial CDS (Contains: E1), no 3'UTR.
Genotype
Deposited n.a.
Provisional n.a.
Confirmed n.a.
Isolate Z4
Keywords partial genome;  partial CDS;  E1; 
Organism
OS Hepatitis C virus
OC Viruses;  ssRNA positive-strand viruses, no DNA stage;  Flaviviridae;  Hepacivirus; 
[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
REFERENCES
[1]
1 - 576
RA Bukh J.;  Purcell R.H.;  Miller R.H.; 
RT Sequence analysis of the 5' noncoding region of hepatitis C virus
RL Proc. Natl. Acad. Sci. U.S.A. 89(11):4942-4946(1992).
RX DOI: 10.1073/pnas.89.11.4942  
PUBMED: 1317578  
[2]
1 - 576
RA Bukh J.;  Purcell R.H.;  Miller R.H.; 
RT At least 12 genotypes of hepatitis C virus predicted by sequence analysis of the putative E1 gene of isolates collected worldwide
RL Proc. Natl. Acad. Sci. U.S.A. 90(17):8234-8238(1993).
RX DOI: 10.1073/pnas.90.17.8234  
PUBMED: 8396266  
[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
FEATURES
source
 1..576
(576)
db_xref taxon : 11103
db_xref EMBL : L16652
db_xref euHCVdb : FJ462439
mol_type genomic RNA
organism Hepatitis C virus
misc_feature
 <1..378
(378)
note C/E1 genotyping region
gene
 <1..>576
(576)
locus_tag HCVORF1
CDS
 <1..>576
(576)
codon_start offset : 1
db_xref UniProtKB/TrEMBL : Q81436
locus_tag HCVORF1
product Partial HCV polyprotein (contains E1).
translation VIEW
mat_peptide
 1..576
(576)

E1
function E1 protein coding sequence (e1 sequence)
locus_tag HCVORF1
product Envelope glycoprotein 1 (gp31) (E1 protein). Produced by proteolytic processing by the host signal peptidases. E1 forms heterodimers with the viral E2 envelope glycoprotein
prod_ft
chain 1..192  (192) E1 protein
prod_ft
transmem 162..190  (29) Potential transmembrane region of E1
standard_name E1
[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
SEQUENCES
Sequence VIEW
Translation(s)
locus_tag HCVORF1 VIEW
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