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Entry details : DQ233310


GENERAL INFORMATION
ID DQ233310; SV 1; linear; genomic RNA; STD; VRL; 261 BP.
Primary AC DQ233310
Creation Date 31-OCT-2005 (Rel. 85, Created)
Update Date 23-JAN-2011 (Rel. 122, Last updated , Version 0)
Description Hepatitis C virus partial genome, no 5'UTR, partial CDS (Contains: C), no 3'UTR.
Genotype
Deposited 1b
Provisional n.a.
Confirmed n.a.
Isolate BR66HD
Keywords partial genome;  partial CDS;  C; 
Organism
OS Hepatitis C virus
OC Viruses;  ssRNA positive-strand viruses, no DNA stage;  Flaviviridae;  Hepacivirus; 
REFERENCES
[1]
1 - 261
RA Lampe E.;  Oliveira R.V.;  Lewis-Ximenez L.L.;  Yoshida C.F.T.; 
RT An Outbreak of HCV Infection in a Hemodialysis Unit in Rio de Janeiro, Brazil
RL Unpublished.
[2]
1 - 261
RA Lampe E.;  Oliveira R.V.;  Lewis-Ximenez L.L.;  Yoshida C.F.T.; 
RL Submitted (07-OCT-2005) to the EMBL/GenBank/DDBJ databases. Virology, Oswaldo Cruz Foundation, Av. Brasil,4365, Rio de Janeiro 21045-900, Brazil
FEATURES
source
1..261
(261)
country country : Brazil
sub-region :
db_xref taxon : 11103
db_xref EMBL : DQ233310
db_xref euHCVdb : D90208
mol_type genomic RNA
note subtype: 1b
organism Hepatitis C virus
gene
<1..>261
(261)
locus_tag HCVORF1
CDS
<1..>261
(261)
codon_start offset : 1
db_xref UniProtKB/TrEMBL : Q308T2
locus_tag HCVORF1
product Partial HCV polyprotein (contains C).
translation VIEW
mat_peptide
<1..>261
(261)

C
function C protein coding sequence (c sequence)
locus_tag HCVORF1
product RNA binding nucleocapsid protein (p21) (capsid) (core protein) (nucleocapsid) (C protein). Produced by proteolytic processing by the host signal peptidases
prod_ft
chain 1..87  (87) C protein
standard_name C
SEQUENCES
Sequence VIEW
Translation(s)
locus_tag HCVORF1 VIEW

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