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Entry details : DQ202323


GENERAL INFORMATION
ID DQ202323; SV 1; linear; genomic RNA; STD; VRL; 320 BP.
Primary AC DQ202323
Creation Date 08-NOV-2005 (Rel. 85, Created)
Update Date 23-JAN-2011 (Rel. 122, Last updated , Version 0)
Description Hepatitis C virus partial genome, no 5'UTR, partial CDS (Contains: C), no 3'UTR.
Genotype
Deposited 3l
Provisional n.a.
Confirmed n.a.
Isolate n.a.
Keywords partial genome;  partial CDS;  C; 
Organism
OS Hepatitis C virus
OC Viruses;  ssRNA positive-strand viruses, no DNA stage;  Flaviviridae;  Hepacivirus; 
REFERENCES
[1]
1 - 320
RA Amini S.;  Ahmadi Pour M.H.;  Azadmanesh K.; 
RT The phylogenetic analysis of hepatitis C virus isolates obtained from two Iranian carriers revealed evidence for a new subtype of HCV genotype 3
RL Virus Genes 33(3):271-278(2006).
RX DOI: 10.1007/s11262-006-0065-9  
PUBMED: 16990997  
[2]
1 - 320
RA Ahmadipour M.H.;  Azadmanesh K.;  Amini S.; 
RL Submitted (09-SEP-2005) to the EMBL/GenBank/DDBJ databases. Hepatitis and AIDS, Pasteur, Pasteur Ave., Tehran 13164, Iran
FEATURES
source
1..320
(320)
clone 12.7
country country : Iran
sub-region :
db_xref taxon : 11103
db_xref EMBL : DQ202323
db_xref euHCVdb : D63821
mol_type genomic RNA
note genotype: 3l
organism Hepatitis C virus
RBS
<1..13
(13)

IRES
function The internal ribosome entry site (IRES) is made up by domains II to IV of the 5'UTR
standard_name IRES
stem_loop
<1..13
(13)

5UTR-dIV
function 5'UTR domain IV is a component of the IRES
standard_name 5UTR-dIV
gene
1..>320
(320)

5UTR-dIV
locus_tag HCVORF1
CDS
1..>320
(320)

5UTR-dIV
codon_start offset : 1
db_xref UniProtKB/TrEMBL : Q30C13
locus_tag HCVORF1
product Partial HCV polyprotein (contains C).
translation VIEW
mat_peptide
1..>320
(320)

C
function C protein coding sequence (c sequence)
locus_tag HCVORF1
product RNA binding nucleocapsid protein (p21) (capsid) (core protein) (nucleocapsid) (C protein). Produced by proteolytic processing by the host signal peptidases
prod_ft
chain 1..106  (106) C protein
prod_ft
init_met 1..1  (1) Removed from C protein by the cellular aminopeptidase
standard_name C
SEQUENCES
Sequence VIEW
Translation(s)
locus_tag HCVORF1 VIEW

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