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Entry details : D87361

[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
GENERAL INFORMATION
ID D87361; SV 1; linear; genomic RNA; STD; VRL; 1151 BP.
Primary AC D87361
Creation Date 08-SEP-1996 (Rel. 49, Created)
Update Date 23-JAN-2011 (Rel. 122, Last updated , Version 0)
Description Hepatitis C virus partial genome, no 5'UTR, partial CDS (Contains: NS5B), partial 3'UTR.
Genotype
Deposited n.a.
Provisional 6e
Confirmed n.a.
Isolate VN540
Keywords partial genome;  partial CDS;  NS5B;  partial 3'UTR; 
Organism
OS Hepatitis C virus
OC Viruses;  ssRNA positive-strand viruses, no DNA stage;  Flaviviridae;  Hepacivirus; 
[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
REFERENCES
[1]
1 - 1151
RA Okamoto H.; 
RL Submitted (27-AUG-1996) to the EMBL/GenBank/DDBJ databases. Hiroaki Okamoto, Jichi Medical School, Immunology Division; Minamikawachi-machi, Kawachi-gun, Tochigi 329-04, Japan (E-mail: hokamoto@jichi.ac.jp, Tel:0285-44-2111(ex.3334), Fax:0285-44-1557)
[2]
1 - 1151
RA Tokita H.;  Okamoto H.;  Tsuda F.;  Song P.;  Nakata S.;  Chosa T.;  Iizuka H.;  Mishiro S.;  Miyakawa Y.;  Mayumi M.; 
RL Unpublished.
[3]
RA Tokita H.;  Okamoto H.;  Tsuda F.;  Song P.;  Nakata S.;  Chosa T.;  Iizuka H.;  Mishiro S.;  Miyakawa Y.;  Mayumi M.; 
RT Hepatitis C virus variants from Vietnam are classifiable into the seventh, eighth, and ninth major genetic groups
RL Proc. Natl. Acad. Sci. U.S.A. 91(23):11022-11026(1994).
RX DOI: 10.1073/pnas.91.23.11022  
PUBMED: 7972001  
[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
FEATURES
source
 1..1151
(1151)
db_xref taxon : 11103
db_xref EMBL : D87361
db_xref euHCVdb : EU408326
mol_type genomic RNA
organism Hepatitis C virus
misc_feature
 <1..334
(334)
note NS5B genotyping region
gene
 <1..1096
(1096)
locus_tag HCVORF1
CDS
 <1..1096
(1096)
codon_start offset : 2
db_xref UniProtKB/TrEMBL : Q96856
locus_tag HCVORF1
product Partial HCV polyprotein (contains NS5B).
translation VIEW
mat_peptide
 <1..1093
(1093)

NS5B
function NS5B protein coding sequence (ns5b sequence)
locus_tag HCVORF1
product NS5B protein. Produced by proteolytic processing by the HCV NS3 protease. NS5B is a RNA-dependent RNA polymerase that plays an essential role in virus replication
prod_ft
chain 1..364  (364) RNA-dependent RNA polymerase (NS5B protein) (P68)
standard_name NS5B
3'UTR
 1097..>1151
(55)

3UTR
function 3'UTR (contains a polypyrimidine stretch and the conserved X region)
standard_name 3UTR
[General] [References] [Features] [Sequences] [Text Entry]    [LANL]
SEQUENCES
Sequence VIEW
Translation(s)
locus_tag HCVORF1 VIEW
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