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Entry details : D37862


GENERAL INFORMATION
ID D37862; SV 1; linear; genomic RNA; STD; VRL; 1155 BP.
Primary AC D37862
Creation Date 24-OCT-1995 (Rel. 45, Created)
Update Date 23-JAN-2011 (Rel. 122, Last updated , Version 0)
Description Hepatitis C virus partial genome, no 5'UTR, partial CDS (Contains: NS5B), partial 3'UTR.
Genotype
Deposited n.a.
Provisional 6j
Confirmed n.a.
Isolate Th553
Keywords partial genome;  partial CDS;  NS5B;  partial 3'UTR; 
Organism
OS Hepatitis C virus
OC Viruses;  ssRNA positive-strand viruses, no DNA stage;  Flaviviridae;  Hepacivirus; 
REFERENCES
[1]
1 - 1155
RA Okamoto H.; 
RL Submitted (02-AUG-1994) to the EMBL/GenBank/DDBJ databases. Hiroaki Okamoto, Jichi Medical School, Immunology Division; Minamikawachi-machi, Kawachi-gun, Tochigi 329-04, Japan (E-mail: hokamoto@jichi.ac.jp, Tel:0285-44-2111(ex.3334), Fax:0285-44-1557)
[2]
1 - 1155
RA Tokita H.;  Okamoto H.;  Luengrojanakul P.;  Vareesangthip K.;  Chainuvati T.;  Iizuka H.;  Tsuda F.;  Miyakawa Y.;  Mayumi M.; 
RT Hepatitis C virus variants from Thailand classifiable into five novel genotypes in the sixth (6b), seventh (7c,7d) and ninth (9b, 9c) major genetic groups
RL J. Gen. Virol. 76:2329-2335(1995).
RX PUBMED: 7561773  
FEATURES
source
1..1155
(1155)
db_xref taxon : 11103
db_xref EMBL : D37862
db_xref euHCVdb : DQ835769
mol_type genomic RNA
organism Hepatitis C virus
misc_feature
<1..334
(334)
note NS5B genotyping region
gene
<1..1096
(1096)
locus_tag HCVORF1
CDS
<1..1096
(1096)
codon_start offset : 2
db_xref UniProtKB/TrEMBL : Q81605
locus_tag HCVORF1
product Partial HCV polyprotein (contains NS5B).
translation VIEW
mat_peptide
<1..1093
(1093)

NS5B
function NS5B protein coding sequence (ns5b sequence)
locus_tag HCVORF1
product NS5B protein. Produced by proteolytic processing by the HCV NS3 protease. NS5B is a RNA-dependent RNA polymerase that plays an essential role in virus replication
prod_ft
chain 1..364  (364) RNA-dependent RNA polymerase (NS5B protein) (P68)
standard_name NS5B
3'UTR
1097..>1155
(59)

3UTR
function 3'UTR (contains a polypyrimidine stretch and the conserved X region)
standard_name 3UTR
SEQUENCES
Sequence VIEW
Translation(s)
locus_tag HCVORF1 VIEW

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