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DATE NEWS
2006-12-26
Release 73 version 0 available (Notes, EMBL Release 89).
2006-11-29
HCV protein pages :
- updated PDB file viewing page of PIG server
- updated NS5A page (added known structural data)
2006-11-29
Nomenclature page :
- added a summary table of know subtypes
- updated table 3 with recently identified new subtypes
2006-11-29
Entry annotation:
- changed threshold of 5'UTR length used to determine partial/complete status of 5'UTR
- updated NS5B sequence use for genotyping (8276-8615 not 8258-8612)
2006-11-29
EditAlignment applet:
- improved speed in sequence selection/deletion, alignment cut
- version 0.1.4
2006-11-29
Extract tool:
- updated interface (input form, citation on result page)
- improved speed
2006-11-29
Number tool:
- fixed problem when sequence contains no annotated mat_peptide
- fixed porblem with number when sequence contains only 5'UTR
- updated interface (input form, citation on result page)
2006-11-27
Release 72 version 0 available (Notes).
2006-10-26
New Extract tool available here. This tool allow the user to extract sequences matching a given region of HCV genome or polyprotein. The input data are sequence boundaries (from/to) or a sequence of AF009606 genome.
2006-10-26
Updated EditAlignment applet (v0.1.3) to fix bad reading of multiple alignment files where sequence ID includes database ID.
2006-10-25
Fixed a bad command line argument preventing Number tool be executed.
2006-10-23
Release 71 version 0 available (Notes).
2006-10-11
Structural alignment tool available in euHCVdb3D. To use EditAlignment or Jmol applet, you need a JRE version 1.4 at least.
2006-10-10
Fixed a bug for EditAlignment applet on Windows preventing loading of alignment.
2006-10-02
The EditAlignment applet is available again (not available since last week).
2006-09-24
Release 70 version 0 available (Notes, EMBL release 88).
2006-08-21
Fiexed internal hyperlinks to euHCVdb reference genomes used to annotate the euHCVdb entries.
2006-08-21
In agreement with the UniProt Knowledgebase team, hyperlinks to UniProtKB are directed to http://www.expasy.org.
2006-08-20
Release 69 version 0 available (Notes).
2006-08-04
The euHCVdb3D database of HCV protein atomic molecular models is now available.

You can acces it:
- from the 3D-Models link in the left menubar
- from the 'Entry details' pages
- when querying euHCVdb with 'Protein features' of type model3d'

The templates used to build the atomic molecular models are:
- PDB:1cu1 for the NS3/NS4A protease/helicase
- PDB:1c2p for the NS5B RNA-dependent RNA-polymerase
2006-07-31
3D atomic models of HCV proteins are temporary not available (new models are under computation).
2006-07-31
Release 68 version 0 available (Notes).
2006-06-30
EditAlignment applet v 0.1.2: improved memory usage (but slower).
2006-06-30
Fixed problem in Number tool due to change in EMBL ID line format in release 87.
2006-06-30
Updated left menu bar by splitting HCV dedicated analysis tools from other.
2006-06-29
Updated WWW interface: added a button to extract polyproteins of reference genomes in Table 1 of Nomenclature page (here).
2006-06-26
Release 67 version 0 available (Notes), corresponding to EMBL release 87.
2006-05-28
Release 66 version 0 available (Notes).
2006-04-26
Release 65 version 0 available (Notes).
2006-03-29
The euHCVdb database and this website are available since 1 year. The development team hopes that you enjoy using them, that you find valuable data and that this tool is helpful to your research.
2006-03-29
Annotation:
- propagated provisionnal genotype to confirmed genotype for complete CDS (that are not recombinant)
- removed model3d annotation when there is no computed 3D models
- removed EMBL-ALIGN link
2006-03-29
EditAlignment: updated certificate
2006-03-29
Release 64 version 0 available (Notes).
2006-02-28
Fixed accession number extraction when querying protein features.
2006-02-27
Added a link to list of PCR primers suitable for subtype identification in nomenclature page (here).
2006-02-27
EditAlignment applet: fixed color problem when cutting the alignment.
2006-02-27
Updated Number tool (improved exceptions management).
2006-02-27
Updated NS3 protease and helicase domain limits.
2006-02-27
Release 63 version 0 available (Notes)
2006-02-01
Number tool: added check of sequence type (DNA/RNA/protein).
2006-02-01
Release 62 version 0 available (Notes). This release was delayed in time due to the upgrade of our cluster of computer and changes in EMBL format. This release of euHCVdb is the first one with data of release 85 of EMBL.
2006-01-04
Number tools: updated Number region details page.
2006-01-04
Fixed EditAlignment exception.
2006-01-02
Happy new year 2006


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